miRBase entry: cpi-mir-17

Stem-loop cpi-mir-17

Accession

MI0029637

Description

Chrysemys picta cpi-mir-17 precursor miRNA

Sequence

gucagaguaauguCAAAGUGCUUACAGUGCAGGUagugauauaagaaccuaCUGCAGUGAAGGCACUUGUAGCauuauauugacaa
(((((.(((((((..((((((((.((.(((((...((.........))...))))).)).))))))))...))))))).)))))..

Structure

--     a       -CA        A  G     GUa  gau 
  gucag guaaugu   AAGUGCUU CA UGCAG   gu   a
  ||||| |||||||   |||||||| || |||||   ||   u
  caguu uauuaCG   UUCACGGA GU ACGUC   ca   a
aa     a       AUG        A  G     auc  aga

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KK083096.1: 1397279-1397364 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-17-5p

Accession	MIMAT0037996
Description	Chrysemys picta cpi-miR-17-5p mature miRNA
Sequence	14 - CAAAGUGCUUACAGUGCAGGU - 34
Evidence	experimental Illumina [1]

Mature cpi-miR-17-3p

Accession	MIMAT0037997
Description	Chrysemys picta cpi-miR-17-3p mature miRNA
Sequence	52 - CUGCAGUGAAGGCACUUGUAGC - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196