Stem-loop ami-mir-129a

Accession

MI0029727

Description

Alligator mississippiensis ami-mir-129a precursor miRNA

Sequence

gucccucucagauCUUUUUGCGGUCUGGGCUUGCuguuccuccaacccacacucaggAAGCCCUUACCCCAAAAAGUAUccgcggggg
..(((((.(.((((((((((.(((..((((((.(((.................))).))))))..))).))))))).))).).)))))

Structure

gu     u a   -       C   CU      G   uuccucc 
  cccuc c gau CUUUUUG GGU  GGGCUU Cug       a
  ||||| | ||| ||||||| |||  |||||| |||       a
  ggggg g cUA GAAAAAC CCA  CCCGAA gac       c
--     c c   U       C   UU      g   ucacacc 

Annotation confidence Not enough data

Genome context

AKHW03005553.1: 69408-69495 [-]

Mature ami-miR-129a-5p

• Accession: MIMAT0038136
• Description: Alligator mississippiensis ami-miR-129a-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGC - 34
• Evidence: experimental ; Illumina [1]

Mature ami-miR-129a-3p

• Accession: MIMAT0038137
• Description: Alligator mississippiensis ami-miR-129a-3p mature miRNA
• Sequence: 58 - AAGCCCUUACCCCAAAAAGUAU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196