miRBase entry: ami-mir-132

Stem-loop ami-mir-132

Accession

MI0029732

Description

Alligator mississippiensis ami-mir-132 precursor miRNA

Sequence

acgucgccagggcaACCGUGGCUUUAGAUUGUUACuguguggugcgugggUAACAGUCUACAGCCAUGGUCGcugggccggacgc
.(((((((..(((.(((((((((.((((((((((((.(((...)))..)))))))))))).))))))))).))).)))..)))).

Structure

a    --   ag   a         U            -g   g 
 cguc  gcc  ggc ACCGUGGCU UAGAUUGUUACu  ugu  
 ||||  |||  ||| ||||||||| ||||||||||||  ||| g
 gcag  cgg  ucG UGGUACCGA AUCUGACAAUgg  gcg  
c    gc   -g   C         C            gu   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AKHW03002312.1: 276-360 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-132

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-132-5p

Accession	MIMAT0038144
Description	Alligator mississippiensis ami-miR-132-5p mature miRNA
Sequence	15 - ACCGUGGCUUUAGAUUGUUAC - 35
Evidence	experimental Illumina [1]

Mature ami-miR-132-3p

Accession	MIMAT0038145
Description	Alligator mississippiensis ami-miR-132-3p mature miRNA
Sequence	51 - UAACAGUCUACAGCCAUGGUCG - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196