Stem-loop ami-mir-133a-2

Accession

MI0029734

Description

Alligator mississippiensis ami-mir-133a-2 precursor miRNA

Sequence

ccaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucaauggaUUUGGUCCCCUUCAACCAGCUGuagcugugcauugaucac
...(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))......

Structure

---cca     uuu    a       AA  U  A        aacug 
      aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
      |||||   |||| |||||||  || || ||||||||      
      uuacg   cgau UCGACCA  UU CC UGGUUUag     u
cacuag     ugu    G       AC  C  C        guaac 

Annotation confidence Not enough data

Genome context

AKHW03001485.1: 1695318-1695410 [-]

Mature ami-miR-133a-5p

• Accession: MIMAT0038146
• Description: Alligator mississippiensis ami-miR-133a-5p mature miRNA
• Sequence: 17 - AGCUGGUAAAAUGGAACCAAAU - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-133a-3p

• Accession: MIMAT0038147
• Description: Alligator mississippiensis ami-miR-133a-3p mature miRNA
• Sequence: 54 - UUUGGUCCCCUUCAACCAGCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196