Stem-loop ami-mir-140

Accession

MI0029745

Description

Alligator mississippiensis ami-mir-140 precursor miRNA

Sequence

gcucucucucuguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcgggauaccggggcgcg
((.((((....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).)))).)).

Structure

-  u    cucu        -  A             A       u  c  c 
 gc cucu    guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
 || ||||    |||||||| || ||||||||||||| ||||||| || || a
 cg gggg    cauagggc GG CACCAAGAUGGGA ACCAucu gu cg  
g  c    ---c        A  -             C       u  -  u 

Annotation confidence Not enough data

Genome context

AKHW03002516.1: 237918-238015 [+]

Mature ami-miR-140-5p

• Accession: MIMAT0038160
• Description: Alligator mississippiensis ami-miR-140-5p mature miRNA
• Sequence: 21 - CAGUGGUUUUACCCUAUGGUAG - 42
• Evidence: experimental ; Illumina [1]

Mature ami-miR-140-3p

• Accession: MIMAT0038161
• Description: Alligator mississippiensis ami-miR-140-3p mature miRNA
• Sequence: 61 - ACCACAGGGUAGAACCACGGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196