Stem-loop ami-mir-142-2

Accession

MI0029747

Description

Alligator mississippiensis ami-mir-142-2 precursor miRNA

Sequence

cggugacagucuccccccccCAUAAAGUAGCGAGCACGACUccgcccccgcgcccgUGUAGUGUUUCCUACUUUAUGGAggggguggcugggag
......(((((..(((((.(((((((((((.((((((.((.((((....)))...).)).)))))).))))))))))).))))).)))))....

Structure

cgguga     uc     c           C      G  U ---   c 
      caguc  ccccc cCAUAAAGUAG GAGCAC AC c   cgc c
      |||||  ||||| ||||||||||| |||||| || |   |||  
      gucgg  ggggg GGUAUUUCAUC UUUGUG UG g   gcg c
--gagg     -u     A           C      A  U ccc   c 

Annotation confidence Not enough data

Genome context

AKHW03003172.1: 18382-18475 [-]

Mature ami-miR-142-3p

• Accession: MIMAT0038163
• Description: Alligator mississippiensis ami-miR-142-3p mature miRNA
• Sequence: 57 - UGUAGUGUUUCCUACUUUAUGGA - 79
• Evidence: experimental ; Illumina [1]

Mature ami-miR-142-2-5p

• Accession: MIMAT0038164
• Description: Alligator mississippiensis ami-miR-142-2-5p mature miRNA
• Sequence: 21 - CAUAAAGUAGCGAGCACGACU - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196