Stem-loop ami-mir-181a-3

Accession

MI0029763

Description

Alligator mississippiensis ami-mir-181a-3 precursor miRNA

Sequence

gauacaaagguuucagcgAACAUUCAACGCUGUCGGUGAGUuuuggcagucagguuaaACCAUCGACCGUUGAGUGUACCCugcaaccuugguaac
..(((.((((((.(((.(.((((((((((..(((((((.((((.(((......)))))))))))))))))))))))).).))).)))))).)))..

Structure

ga   a      u   c A          CU       A    u   ag 
  uac aagguu cag g ACAUUCAACG  GUCGGUG GUuu ggc  u
  ||| |||||| ||| | ||||||||||  ||||||| |||| |||   
  aug uuccaa guC C UGUGAGUUGC  CAGCUAC CAaa uug  c
ca   g      c   C A          --       -    -   ga 

Annotation confidence Not enough data

Genome context

AKHW03005909.1: 106430-106525 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-181a-3

Mature ami-miR-181a-5p

• Accession: MIMAT0038186
• Description: Alligator mississippiensis ami-miR-181a-5p mature miRNA
• Sequence: 19 - AACAUUCAACGCUGUCGGUGAGU - 41
• Evidence: experimental ; Illumina [1]

Mature ami-miR-181a-3-3p

• Accession: MIMAT0038189
• Description: Alligator mississippiensis ami-miR-181a-3-3p mature miRNA
• Sequence: 59 - ACCAUCGACCGUUGAGUGUACCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196