miRBase entry: ami-mir-181b-2

Stem-loop ami-mir-181b-2

Accession

MI0029765

Description

Alligator mississippiensis ami-mir-181b-2 precursor miRNA

Sequence

ugcaucuaauggcugcaaucAACAUUCAUUGCUGUCGGUGGGUUuuaguuuguaccaACUCACUGAUCAAUGAAUGCAaacugcggaccagauagcua
.((((((...(((((((.....(((((((((..(((((((((((...((....)).)))))))))))))))))))).....))))).)))))).))..

Structure

-u  -    aau  -     aucAA         CU           uua  u 
  gc aucu   gg cugca     CAUUCAUUG  GUCGGUGGGUU   gu u
  || ||||   || |||||     |||||||||  |||||||||||   ||  
  cg uaga   cc ggcgu     GUAAGUAAC  UAGUCACUCAa   ca g
au  a    ---  a     caaAC         --           --c  u

Annotation confidence Not enough data

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Genome context

AKHW03004379.1: 113566-113663 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-181b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-181b-5p

Accession	MIMAT0038190
Description	Alligator mississippiensis ami-miR-181b-5p mature miRNA
Sequence	21 - AACAUUCAUUGCUGUCGGUGGGUU - 44
Evidence	experimental Illumina [1]

Mature ami-miR-181b-2-3p

Accession	MIMAT0038192
Description	Alligator mississippiensis ami-miR-181b-2-3p mature miRNA
Sequence	58 - ACUCACUGAUCAAUGAAUGCA - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196