Stem-loop ami-mir-214

Accession

MI0029797

Description

Alligator mississippiensis ami-mir-214 precursor miRNA

Sequence

cggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccacucaccuguACAGCAGGCACAGACAGGCAGucacaugacaaccc
.((.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))))))))))

Structure

c  a           u          ACA            aacau 
 gg guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
 || ||||||||||| ||||||||||   ||||||||||||     c
 cc caacaguacac GACGGACAGA   GGACGACAuguc     a
-  -           u          CAC            cacuc 

Annotation confidence Not enough data

Genome context

AKHW03002184.1: 575707-575799 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-214

Mature ami-miR-214-5p

• Accession: MIMAT0038238
• Description: Alligator mississippiensis ami-miR-214-5p mature miRNA
• Sequence: 18 - UGCCUGUCUACACUUGCUGUGC - 39
• Evidence: experimental ; Illumina [1]

Mature ami-miR-214-3p

• Accession: MIMAT0038239
• Description: Alligator mississippiensis ami-miR-214-3p mature miRNA
• Sequence: 59 - ACAGCAGGCACAGACAGGCAG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196