miRBase entry: ami-mir-221

Stem-loop ami-mir-221

Accession

MI0029806

Description

Alligator mississippiensis ami-mir-221 precursor miRNA

Sequence

uccagguuuggggcaugaACCUGGCAUACAAUGUAGAUUUcuguauuucuuaagcaacAGCUACAUUGUCUGCUGGGUUUCaagcugccuggaaa
(((((((....(((.(((((((((((.(((((((((....((((............))))))))))))).))))))).)))).))))))))))..

Structure

--       uugg   a    -       U         AUUU    auuuc 
  uccaggu    ggc ugaA CCUGGCA ACAAUGUAG    cugu     u
  |||||||    ||| |||| ||||||| |||||||||    ||||      
  agguccg    ucg aCUU GGGUCGU UGUUACAUC    GAca     u
aa       ----   a    U       C         ----    acgaa

Annotation confidence Not enough data

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Genome context

AKHW03002379.1: 2576296-2576390 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-221-5p

Accession	MIMAT0038252
Description	Alligator mississippiensis ami-miR-221-5p mature miRNA
Sequence	19 - ACCUGGCAUACAAUGUAGAUUU - 40
Evidence	experimental Illumina [1]

Mature ami-miR-221-3p

Accession	MIMAT0038253
Description	Alligator mississippiensis ami-miR-221-3p mature miRNA
Sequence	59 - AGCUACAUUGUCUGCUGGGUUUC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196