miRBase entry: ami-mir-425

Stem-loop ami-mir-425

Accession

MI0029823

Description

Alligator mississippiensis ami-mir-425 precursor miRNA

Sequence

ggagagagauugcuuuggAAUGACACGAUCACUCCCGCUGAgcgagacgcccgacagcCAUCGGGAAUAUCGUGUCGGUCcaaagcucuuucg
...((((((..((((((((.(((((((((...(((((.((.((.............)))).)))))..))))))))).)))))))))))))).

Structure

gga      uu        A         CAC     C  A  gagac 
   gagaga  gcuuuggA UGACACGAU   UCCCG UG gc     g
   ||||||  |||||||| |||||||||   ||||| || ||     c
   cuuucu  cgaaacCU GCUGUGCUA   AGGGC AC cg     c
--g      --        G         -UA     U  -  acagc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AKHW03003150.1: 64121-64213 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-425-5p

Accession	MIMAT0038277
Description	Alligator mississippiensis ami-miR-425-5p mature miRNA
Sequence	19 - AAUGACACGAUCACUCCCGCUGA - 41
Evidence	experimental Illumina [1]

Mature ami-miR-425-3p

Accession	MIMAT0038278
Description	Alligator mississippiensis ami-miR-425-3p mature miRNA
Sequence	59 - CAUCGGGAAUAUCGUGUCGGUC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196