Stem-loop ami-mir-460b

Accession

MI0029835

Description

Alligator mississippiensis ami-mir-460b precursor miRNA

Sequence

ggacguggcucuauguugUCCUCAUUGUACAUGCUGUGUGuauauuuaugacguaCACAGCGCAUGCAAUGUGGACAgaauggagaccagcaggcuc
.....(((((((((.((((((.(((((..(((((..(((((((.........)))))))..)))))))))).)))))).)))))).)))........

Structure

---ggacg   -      g      U     UA     UG       auu 
        ugg cucuau uugUCC CAUUG  CAUGC  UGUGuau   u
        ||| |||||| |||||| |||||  |||||  |||||||   a
        acc gaggua gACAGG GUAAC  GUACG  ACACaug   u
cucggacg   a      a      U     --     CG       cag 

Annotation confidence Not enough data

Genome context

AKHW03003879.1: 510484-510580 [+]

Mature ami-miR-460b-5p

• Accession: MIMAT0038293
• Description: Alligator mississippiensis ami-miR-460b-5p mature miRNA
• Sequence: 19 - UCCUCAUUGUACAUGCUGUGUG - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-460b-3p

• Accession: MIMAT0038294
• Description: Alligator mississippiensis ami-miR-460b-3p mature miRNA
• Sequence: 56 - CACAGCGCAUGCAAUGUGGACA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196