Stem-loop ami-mir-1397

Accession

MI0029848

Description

Alligator mississippiensis ami-mir-1397 precursor miRNA

Sequence

acagagugcgaugugugcauUGCAUUGCGACGGGUUACAUCacuggucguaacaugAUGUAACCCAACGCAGCAUGAUguaagcgucgugauacauugg
.(((.(((((((((.((((((...(((((..(((((((((((.((.......)))))))))))))..)))))...)))))).)))))))...)).))).

Structure

a   a  ---       g      GCA     AC           c  gu 
 cag gu   gcgaugu ugcauU   UUGCG  GGGUUACAUCa ug  c
 ||| ||   ||||||| ||||||   |||||  ||||||||||| ||  g
 guu ca   ugcugcg augUAG   GACGC  CCCAAUGUAgu ac  u
g   a  uag       a      UAC     AA           -  aa 

Annotation confidence Not enough data

Genome context

AKHW03001669.1: 1016066-1016164 [+]

Mature ami-miR-1397-5p

• Accession: MIMAT0038314
• Description: Alligator mississippiensis ami-miR-1397-5p mature miRNA
• Sequence: 21 - UGCAUUGCGACGGGUUACAUC - 41
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1397-3p

• Accession: MIMAT0038315
• Description: Alligator mississippiensis ami-miR-1397-3p mature miRNA
• Sequence: 57 - AUGUAACCCAACGCAGCAUGAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196