miRBase entry: cli-mir-29b-1

Stem-loop cli-mir-29b-1

Accession

MI0029928

Description

Columba livia cli-mir-29b-1 precursor miRNA

Sequence

ccucaggaaGCUGGUUUCAUAUGGUGGUUUAGAuuuaacuauucauugucUAGCACCAUUUGAAAUCAGUGUUcuuggag
..(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).)))))))..

Structure

cc       -          U      GU      uuaac 
  ucaggaa GCUGGUUUCA AUGGUG  UUAGAu     u
  ||||||| |||||||||| ||||||  ||||||     a
  gguucUU UGACUAAAGU UACCAC  GAUcug     u
ga       G          U      --      uuacu

Annotation confidence Not enough data

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Genome context

KB375423.1: 49398-49477 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-29b-5p

Accession	MIMAT0038449
Description	Columba livia cli-miR-29b-5p mature miRNA
Sequence	10 - GCUGGUUUCAUAUGGUGGUUUAGA - 33
Evidence	experimental Illumina [1]

Mature cli-miR-29b-3p

Accession	MIMAT0038450
Description	Columba livia cli-miR-29b-3p mature miRNA
Sequence	51 - UAGCACCAUUUGAAAUCAGUGUU - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196