miRBase entry: cli-mir-30c-1

Stem-loop cli-mir-30c-1

Accession

MI0029931

Description

Columba livia cli-mir-30c-1 precursor miRNA

Sequence

guuguagcacgUGUAAACAUCCUACACUCUCAGCUgugaacugagguggCUGGGAGAGGAUUGUUUACUCCuucugccau
...((((...(.(((((((((((...(((((((((((........))))))))))))))).))))))).)...))))...

Structure

guu    cac U       -    ACA           gaa 
   guag   g GUAAACA UCCU   CUCUCAGCUgu   c
   ||||   | ||||||| ||||   |||||||||||    
   cguc   C CAUUUGU AGGA   GAGGGUCggug   u
uac    uuC U       U    ---           gag

Annotation confidence Not enough data

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Genome context

KB375684.1: 335113-335192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-30c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-30c-5p

Accession	MIMAT0038453
Description	Columba livia cli-miR-30c-5p mature miRNA
Sequence	12 - UGUAAACAUCCUACACUCUCAGCU - 35
Evidence	experimental Illumina [1]

Mature cli-miR-30c-3p

Accession	MIMAT0038454
Description	Columba livia cli-miR-30c-3p mature miRNA
Sequence	50 - CUGGGAGAGGAUUGUUUACUCC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196