miRBase entry: cli-mir-34c

Stem-loop cli-mir-34c

Accession

MI0029941

Description

Columba livia cli-mir-34c precursor miRNA

Sequence

aucagccuaguuacuAGGCAGUGUAGUUAGCUGAUUGCcaaaaguaccAAUCACUAGCCACACAGCCAGGuaaaaaggcuugg
...(((((..(((((.(((.((((.(((((.((((((..........))))))))))).)))).))).)))))..)))))...

Structure

auc     ag     A   A    A     C      Ccaa 
   agccu  uuacu GGC GUGU GUUAG UGAUUG    a
   |||||  ||||| ||| |||| ||||| ||||||     
   ucgga  aauGG CCG CACA CGAUC ACUAAc    a
ggu     aa     A   A    C     -      caug

Annotation confidence Not enough data

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Genome context

KB375352.1: 2053395-2053477 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-34c-5p

Accession	MIMAT0038471
Description	Columba livia cli-miR-34c-5p mature miRNA
Sequence	16 - AGGCAGUGUAGUUAGCUGAUUGC - 38
Evidence	experimental Illumina [1]

Mature cli-miR-34c-3p

Accession	MIMAT0038472
Description	Columba livia cli-miR-34c-3p mature miRNA
Sequence	49 - AAUCACUAGCCACACAGCCAGG - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196