miRBase entry: cli-mir-133b

Stem-loop cli-mir-133b

Accession

MI0029966

Description

Columba livia cli-mir-133b precursor miRNA

Sequence

uaugcucugcucugGCUGGUCAAACGGAACCAAGCCcaucuuccucggaggUUUGGUCCCCUUCAACCAGCUAuagcaguguuga
...((.(((((.((((((((..((.((.((((((((..(((.....))))))))))).)).))..)))))))).))))).))...

Structure

uau  u     c        CA  C  A        ca   u 
   gc cugcu ugGCUGGU  AA GG ACCAAGCC  ucu c
   || ||||| ||||||||  || || ||||||||  ||| c
   ug gacga AUCGACCA  UU CC UGGUUUgg  agg u
agu  u     u        AC  C  C        --   c

Annotation confidence Not enough data

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Genome context

KB375390.1: 6645-6729 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-133b-5p

Accession	MIMAT0038511
Description	Columba livia cli-miR-133b-5p mature miRNA
Sequence	15 - GCUGGUCAAACGGAACCAAGCC - 36
Evidence	experimental Illumina [1]

Mature cli-miR-133b-3p

Accession	MIMAT0038512
Description	Columba livia cli-miR-133b-3p mature miRNA
Sequence	52 - UUUGGUCCCCUUCAACCAGCUA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196