miRBase entry: cli-mir-216b

Stem-loop cli-mir-216b

Accession

MI0030018

Description

Columba livia cli-mir-216b precursor miRNA

Sequence

gucgcagacugggAAAUCUCUGCAGGCAAAUGUGAugucuuuauagcaaucucACAAUUACCUGUAGAGAUUCUAcaaucuggcacc
((..((((.((((((.((((((((((.((.(((((((.((....))))...))))).)).)))))))))))))).)).))))..)).

Structure

-  cg    c  -    A          C  A     ---  u  u 
 gu  caga ug ggAA UCUCUGCAGG AA UGUGA   ug cu u
 ||  |||| || |||| |||||||||| || |||||   || ||  
 ca  gucu ac UCUU AGAGAUGUCC UU ACAcu   ac ga a
c  cg    a  A    -          A  A     cua  -  u

Annotation confidence Not enough data

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Genome context

KB375999.1: 125953-126039 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-216b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-216b-5p

Accession	MIMAT0038598
Description	Columba livia cli-miR-216b-5p mature miRNA
Sequence	14 - AAAUCUCUGCAGGCAAAUGUGA - 35
Evidence	experimental Illumina [1]

Mature cli-miR-216b-3p

Accession	MIMAT0038599
Description	Columba livia cli-miR-216b-3p mature miRNA
Sequence	54 - ACAAUUACCUGUAGAGAUUCUA - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196