miRBase entry: cli-mir-222a

Stem-loop cli-mir-222a

Accession

MI0030023

Description

Columba livia cli-mir-222a precursor miRNA

Sequence

uguaguugcucaucaauCGCUCAGUAGUCAGUGUAGAUCCugucuuuacaaucagcAGCUACAUCUGGCUACUGGGUCUCugaugacaacucgu
.(.(((((.((((((...((((((((((((((((((...(((..........)))...))))).)))))))))))))...))))))))))))..

Structure

-u u     c      auC             -     AUC   ucuu 
  g aguug ucauca   GCUCAGUAGUCAG UGUAG   Cug    u
  | ||||| ||||||   ||||||||||||| |||||   |||     
  c ucaac aguagu   UGGGUCAUCGGUC ACAUC   gac    a
ug -     -      CUC             U     GAc   uaac

Annotation confidence Not enough data

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Genome context

KB375371.1: 1295182-1295275 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-222a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-222a-5p

Accession	MIMAT0038606
Description	Columba livia cli-miR-222a-5p mature miRNA
Sequence	18 - CGCUCAGUAGUCAGUGUAGAUCC - 40
Evidence	experimental Illumina [1]

Mature cli-miR-222a-3p

Accession	MIMAT0038607
Description	Columba livia cli-miR-222a-3p mature miRNA
Sequence	57 - AGCUACAUCUGGCUACUGGGUCUC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196