miRBase entry: cli-mir-425

Stem-loop cli-mir-425

Accession

MI0030040

Description

Columba livia cli-mir-425 precursor miRNA

Sequence

gagagacggcuuuggAAUGACACGAUCACUCCCGCUGAGcgggcagccugaggcCAUCGGGGAUGUCGUGUCUGUCCaaagcucuuucggu
((((((..((((((((..(((((((.((.(((((.((.(((((...)))...)))).))))).)))))))))..))))))))))))))...

Structure

---      cg        AU       U  C     C  A  ---   c 
   gagaga  gcuuuggA  GACACGA CA UCCCG UG Gc   ggg  
   ||||||  ||||||||  ||||||| || ||||| || ||   ||| a
   cuuucu  cgaaaCCU  CUGUGCU GU GGGGC AC cg   ucc  
ugg      --        GU       -  A     U  -  gag   g

Annotation confidence Not enough data

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Genome context

KB375561.1: 2757261-2757351 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-425-5p

Accession	MIMAT0038632
Description	Columba livia cli-miR-425-5p mature miRNA
Sequence	16 - AAUGACACGAUCACUCCCGCUGAG - 39
Evidence	experimental Illumina [1]

Mature cli-miR-425-3p

Accession	MIMAT0038633
Description	Columba livia cli-miR-425-3p mature miRNA
Sequence	55 - CAUCGGGGAUGUCGUGUCUGUCC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196