miRBase entry: cli-mir-449d

Stem-loop cli-mir-449d

Accession

MI0030045

Description

Columba livia cli-mir-449d precursor miRNA

Sequence

guguguggugaugAGGCAGUGUAUUGUUAGUUAGCUGuucuucauacaccaGCAACUGACUACACUGCCACAucaacacaucacugaga
(((((((.(((((.(((((((((..(((((((.((((............)))))))))))))))))))).))))).)))).))).....

Structure

-----   -    g     A         UU       A    uucuu 
     gug ugug ugaug GGCAGUGUA  GUUAGUU GCUG     c
     ||| |||| ||||| |||||||||  ||||||| ||||      
     cac acac acuAC CCGUCACAU  CAGUCAA CGac     a
agagu   u    a     A         --       -    cacau

Annotation confidence Not enough data

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Genome context

KB375359.1: 2802140-2802228 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cli-mir-449d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-449d-5p

Accession	MIMAT0038641
Description	Columba livia cli-miR-449d-5p mature miRNA
Sequence	14 - AGGCAGUGUAUUGUUAGUUAGCUG - 37
Evidence	experimental Illumina [1]

Mature cli-miR-449d-3p

Accession	MIMAT0038642
Description	Columba livia cli-miR-449d-3p mature miRNA
Sequence	52 - GCAACUGACUACACUGCCACA - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196