miRBase entry: cli-mir-1788

Stem-loop cli-mir-1788

Accession

MI0030080

Description

Columba livia cli-mir-1788 precursor miRNA

Sequence

cugucuccggGGCUUGUUUUCCGUUGCCUGCGguuuguuccagugacuCAGGCAGCGAAAGCAAGUCUGggaggcug
..((((((.((((((((((((.((((((((.((((.........)))))))))))))))))))))))).))))))..

Structure

cu      g            C        C    ugu 
  gucucc gGGCUUGUUUUC GUUGCCUG Gguu   u
  |||||| |||||||||||| |||||||| ||||   c
  cggagg UCUGAACGAAAG CGACGGAC ucag   c
gu      G            -        -    uga

Annotation confidence Not enough data

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Genome context

KB375305.1: 1391510-1391586 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1788

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-1788-5p

Accession	MIMAT0038700
Description	Columba livia cli-miR-1788-5p mature miRNA
Sequence	11 - GGCUUGUUUUCCGUUGCCUGCG - 32
Evidence	experimental Illumina [1]

Mature cli-miR-1788-3p

Accession	MIMAT0038701
Description	Columba livia cli-miR-1788-3p mature miRNA
Sequence	49 - CAGGCAGCGAAAGCAAGUCUG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196