miRBase entry: pbv-mir-15a

Stem-loop pbv-mir-15a

Accession

MI0030156

Description

Python bivittatus pbv-mir-15a precursor miRNA

Sequence

ccucaaaguacuaUAGCAGCACAUCAUGAUUUGUGuuucauaauaaauaugCAAGUCAUUAUUUGCUGCUUUAgaauuuuaagg
(((.(((((.(((.(((((((.((.(((((((((((............))))))))))).)).))))))).))).))))).)))

Structure

   c     a   U       C  C           uucau 
ccu aaagu cua AGCAGCA AU AUGAUUUGUGu     a
||| ||||| ||| ||||||| || |||||||||||      
gga uuuua gAU UCGUCGU UA UACUGAACgua     a
   a     a   U       U  U           uaaau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KE954284.1: 233014-233097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-15a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-15a-5p

Accession	MIMAT0038829
Description	Python bivittatus pbv-miR-15a-5p mature miRNA
Sequence	14 - UAGCAGCACAUCAUGAUUUGUG - 35
Evidence	experimental Illumina [1]

Mature pbv-miR-15a-3p

Accession	MIMAT0038830
Description	Python bivittatus pbv-miR-15a-3p mature miRNA
Sequence	52 - CAAGUCAUUAUUUGCUGCUUUA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196