miRBase entry: pbv-mir-27b

Stem-loop pbv-mir-27b

Accession

MI0030178

Description

Python bivittatus pbv-mir-27b precursor miRNA

Sequence

agaccucucuagugaggugcAGAGCUUAGCUGAUUGGUGAACAgugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaguuga
.(((.(((((..(.(((((((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))))))).)))))).)))..

Structure

-a   c     ag g                 G    G       u  uug 
  gac ucucu  u aggugcAGAGCUUAGCU AUUG UGAACAg ga   a
  ||| |||||  | ||||||||||||||||| |||| ||||||| ||   u
  uug agaga  a uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
ag   a     -- g                 -    -       u  ccu

Annotation confidence Not enough data

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Genome context

KE954626.1: 204871-204970 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-27b-5p

Accession	MIMAT0038863
Description	Python bivittatus pbv-miR-27b-5p mature miRNA
Sequence	21 - AGAGCUUAGCUGAUUGGUGAACA - 43
Evidence	experimental Illumina [1]

Mature pbv-miR-27b-3p

Accession	MIMAT0038864
Description	Python bivittatus pbv-miR-27b-3p mature miRNA
Sequence	63 - UUCACAGUGGCUAAGUUCUGC - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196