Stem-loop pbv-mir-29a-1

Accession

MI0030179

Description

Python bivittatus pbv-mir-29a-1 precursor miRNA

Sequence

ccccuuuaaaggauaacUGAUUUCUUCUGGUGUUCGGAgucuauuccucuuuCUAGCACCAUUUGAAAUCGGUuauagugauugggga
((((........((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))).

Structure

-    uuuaaagg            UUC       C    ucua 
 cccc        auaacUGAUUUC   UGGUGUU GGAg    u
 ||||        ||||||||||||   ||||||| ||||    u
 gggg        uauUGGCUAAAG   ACCACGA UCuu    c
a    -uuaguga            UUU       -    ucuc 

Annotation confidence Not enough data

Genome context

KE956667.1: 8665-8752 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-29a-1

Mature pbv-miR-29a-5p

• Accession: MIMAT0038865
• Description: Python bivittatus pbv-miR-29a-5p mature miRNA
• Sequence: 18 - UGAUUUCUUCUGGUGUUCGGA - 38
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-29a-3p

• Accession: MIMAT0038866
• Description: Python bivittatus pbv-miR-29a-3p mature miRNA
• Sequence: 53 - CUAGCACCAUUUGAAAUCGGU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196