miRBase entry: pbv-mir-133a-2

Stem-loop pbv-mir-133a-2

Accession

MI0030229

Description

Python bivittatus pbv-mir-133a-2 precursor miRNA

Sequence

caaugcuuugcuuaAGCUGGUAAAAUGGAAUCAAAUcacauguuuaauggaUUUGGUCCCCUUCAACCAGCUGUagcuauguauugau
((((((...(((..(((((((..((.((.((((((((.(((.....))))))))))).)).))..)))))))..)))...))))))..

Structure

--      uuu   ua       AA  U  A        a   g 
  caaugc   gcu  AGCUGGU  AA GG AUCAAAUc cau u
  ||||||   |||  |||||||  || || |||||||| ||| u
  guuaug   cga  UCGACCA  UU CC UGGUUUag gua u
ua      uau   UG       AC  C  C        -   a

Annotation confidence Not enough data

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Genome context

KE953557.1: 28060-28147 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-133a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-133a-3p

Accession	MIMAT0038936
Description	Python bivittatus pbv-miR-133a-3p mature miRNA
Sequence	52 - UUUGGUCCCCUUCAACCAGCUGU - 74
Evidence	experimental Illumina [1]

Mature pbv-miR-133a-2-5p

Accession	MIMAT0038937
Description	Python bivittatus pbv-miR-133a-2-5p mature miRNA
Sequence	15 - AGCUGGUAAAAUGGAAUCAAAU - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196