miRBase entry: pbv-mir-133b

Stem-loop pbv-mir-133b

Accession

MI0030230

Description

Python bivittatus pbv-mir-133b precursor miRNA

Sequence

gaagaagagcauugcucugGCUGGUCAAAAGGAACCAAGGCCgucuuuccuggaggUUUGGUCCCCUUCAACCAGCUAuagcagugcugaccuu
.(((...(((((((((.((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))).)))))))))...)))

Structure

g   aag         c        CA  A  A      G  g  uu 
 aag   agcauugcu ugGCUGGU  AA GG ACCAAG CC uc  u
 |||   ||||||||| ||||||||  || || |||||| || ||   
 uuc   ucgugacga AUCGACCA  UU CC UGGUUU gg gg  c
-   cag         u        AC  C  C      -  a  uc

Annotation confidence Not enough data

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Genome context

KE957741.1: 77729-77822 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-133b-5p

Accession	MIMAT0038938
Description	Python bivittatus pbv-miR-133b-5p mature miRNA
Sequence	20 - GCUGGUCAAAAGGAACCAAGGCC - 42
Evidence	experimental Illumina [1]

Mature pbv-miR-133b-3p

Accession	MIMAT0038939
Description	Python bivittatus pbv-miR-133b-3p mature miRNA
Sequence	57 - UUUGGUCCCCUUCAACCAGCUA - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196