miRBase entry: pbv-mir-143

Stem-loop pbv-mir-143

Accession

MI0030241

Description

Python bivittatus pbv-mir-143 precursor miRNA

Sequence

uucgaugucucccagcccaaGGUGCAGUGCUGCAUCUCUGGUCaguugugagucUGAGAUGAAGCACUGUAGCUCaggaagggagga
.......((((((..((..((.(((((((((.((((((.(((((....))).)).)))))).))))))))).))..))..)))))).

Structure

uucgaug      ag  ca  G         G      U  -   g 
       ucuccc  cc  aG UGCAGUGCU CAUCUC GG UCa u
       ||||||  ||  || ||||||||| |||||| || |||  
       ggaggg  gg  UC AUGUCACGA GUAGAG cu agu u
------a      aa  aC  G         A      U  g   g

Annotation confidence Not enough data

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Genome context

KE953037.1: 158979-159065 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-143

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-143-5p

Accession	MIMAT0038955
Description	Python bivittatus pbv-miR-143-5p mature miRNA
Sequence	21 - GGUGCAGUGCUGCAUCUCUGGUC - 43
Evidence	experimental Illumina [1]

Mature pbv-miR-143-3p

Accession	MIMAT0038956
Description	Python bivittatus pbv-miR-143-3p mature miRNA
Sequence	55 - UGAGAUGAAGCACUGUAGCUC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196