miRBase entry: pbv-mir-194-1

Stem-loop pbv-mir-194-1

Accession

MI0030267

Description

Python bivittatus pbv-mir-194-1 precursor miRNA

Sequence

acgguguuaucaagUGUAACAGCAACUCCAUGUGGAauaagccucuuuccaguggaggugguguuacuuuugaaagccacugac
.(((((((.(((((.((((((.((.((((((.(((((.........))))))))))).)).)))))).))))).)).)))))..

Structure

-a     -  a     U      G  A      G     uaa 
  cggug uu ucaag GUAACA CA CUCCAU UGGAa   g
  ||||| || ||||| |||||| || |||||| |||||   c
  gucac ga aguuu cauugu gu gaggug accuu   c
ca     c  a     u      g  g      -     ucu

Annotation confidence Not enough data

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Genome context

KE955471.1: 57450-57533 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-194-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-194-5p

Accession	MIMAT0038992
Description	Python bivittatus pbv-miR-194-5p mature miRNA
Sequence	15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196