miRBase entry: pbv-mir-214

Stem-loop pbv-mir-214

Accession

MI0030287

Description

Python bivittatus pbv-mir-214 precursor miRNA

Sequence

uggauagaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaaucca
(((((.....(((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))

Structure

     agagu         u          ACA            aacau 
uggau     ugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
|||||     ||||||||| ||||||||||   ||||||||||||     c
accua     acaguacac GACGGACAGA   GGACGACAuguc     u
     -----         U          CAC            cacuc

Annotation confidence Not enough data

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Genome context

KE960262.1: 19329-19426 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-214

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-214-5p

Accession	MIMAT0039018
Description	Python bivittatus pbv-miR-214-5p mature miRNA
Sequence	22 - UGCCUGUCUACACUUGCUGUGC - 43
Evidence	experimental Illumina [1]

Mature pbv-miR-214-3p

Accession	MIMAT0039019
Description	Python bivittatus pbv-miR-214-3p mature miRNA
Sequence	63 - ACAGCAGGCACAGACAGGCAGU - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196