miRBase entry: pbv-mir-425

Stem-loop pbv-mir-425

Accession

MI0030308

Description

Python bivittatus pbv-mir-425 precursor miRNA

Sequence

ggaagagaaauugccgaggAAUGACACGAUCACUCCCGCUGAGcgaguggacgcagagcCACGGGGCUGUCGUGUCUGUCCugagcuuuuucc
......((((..((..((((..((((((((..((((.(((..(((......)))..)))...))))..))))))))..))))..))..)))).

Structure

ggaaga    uu  cg    AU        CA    --C   GA   ag 
      gaaa  gc  aggA  GACACGAU  CUCC   GCU  Gcg  u
      ||||  ||  ||||  ||||||||  ||||   |||  |||   
      cuuu  cg  uCCU  CUGUGCUG  GGGG   cga  cgc  g
-----c    uu  ag    GU        UC    CAC   ga   ag

Annotation confidence Not enough data

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Genome context

KE954653.1: 223809-223901 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-425-5p

Accession	MIMAT0039048
Description	Python bivittatus pbv-miR-425-5p mature miRNA
Sequence	20 - AAUGACACGAUCACUCCCGCUGAG - 43
Evidence	experimental Illumina [1]

Mature pbv-miR-425-3p

Accession	MIMAT0039049
Description	Python bivittatus pbv-miR-425-3p mature miRNA
Sequence	60 - CACGGGGCUGUCGUGUCUGUCC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196