miRBase entry: pbv-mir-429

Stem-loop pbv-mir-429

Accession

MI0030309

Description

Python bivittatus pbv-mir-429 precursor miRNA

Sequence

gcgccugccgaucgcugucuuaccagacaaauuuagaucuuaaucuauuccugucUAAUACUGUCUGGUAAUGCCGUcgauucgcauuggcaa
..((((((.((((((.((.((((((((((...((((((..............))))))...)))))))))).)).).))))).)))..)))..

Structure

gc   --   c     - u  c          aau      cuuaau 
  gcc  ugc gaucg c gu uuaccagaca   uuagau      c
  |||  ||| ||||| | || ||||||||||   ||||||       
  cgg  acg uuagc G CG AAUGGUCUGU   AAUcug      u
aa   uu   c     U C  U          CAU      uccuua

Annotation confidence Not enough data

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Genome context

KE953648.1: 224184-224276 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-429

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-429-3p

Accession	MIMAT0039050
Description	Python bivittatus pbv-miR-429-3p mature miRNA
Sequence	56 - UAAUACUGUCUGGUAAUGCCGU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196