miRBase entry: pbv-mir-599

Stem-loop pbv-mir-599

Accession

MI0030323

Description

Python bivittatus pbv-mir-599 precursor miRNA

Sequence

gaacauccacaguguguuugauaagcugacaugggacaggaauucuuuuucacuGUUGUGUCAAUUUAUCAAACCCauacguggauagcaa
....((((((.((((((((((((((.((((((..((((((((......))).))))))))))).))))))))))..)))))))))).....

Structure

-gaac      a    --          c      gg     -   uu 
     auccac gugu  guuugauaag ugacau  gacag gaa  c
     |||||| ||||  |||||||||| ||||||  ||||| |||   
     uaggug caua  CAAACUAUUU ACUGUG  UUGuc cuu  u
aacga      -    CC          A      --     a   uu

Annotation confidence Not enough data

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Genome context

KE953831.1: 12509-12599 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-599

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-599-3p

Accession	MIMAT0039070
Description	Python bivittatus pbv-miR-599-3p mature miRNA
Sequence	55 - GUUGUGUCAAUUUAUCAAACCC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196