miRBase entry: oha-mir-99b

Stem-loop oha-mir-99b


Accession
MI0031496
Description
Ophiophagus hannah oha-mir-99b precursor miRNA


Sequence

gguugccauaAACCCGUAGAUCCGAACUUGCGGuaccacugcuucacaCAAGCUCGAGUCUGUGGGUAUgugucgaccu
(((((.((((.((((((((((.(((.((((.(..............).)))).))).)))))))))).)))).))))).

Structure
-     c    A          C   A    C Guacca 
 gguug caua ACCCGUAGAU CGA CUUG G      c
 ||||| |||| |||||||||| ||| |||| |       
 ccagc gugU UGGGUGUCUG GCU GAAC c      u
u     u    A          A   C    a acuucg 


Annotation confidence Not enough data
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Genome context
AZIM01003436.1: 63475-63553 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-99b-5p

Accession MIMAT0036966
Description Ophiophagus hannah oha-miR-99b-5p mature miRNA
Sequence 11 - AACCCGUAGAUCCGAACUUGCGG - 33
Evidence not_experimental

Mature oha-miR-99b-3p

Accession MIMAT0036967
Description Ophiophagus hannah oha-miR-99b-3p mature miRNA
Sequence 49 - CAAGCUCGAGUCUGUGGGUAU - 69
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656