miRBase entry: cja-mir-513f-2

Stem-loop cja-mir-513f-2

Accession

MI0032212

Description

Callithrix jacchus cja-mir-513f-2 precursor miRNA

Sequence

gggaugccacauccagccauccagcgugcagugcccuuacaagaaggugccauucauguggacuaaaucaUGAAUGUCGCCUUCUUGAGAAGAguaauguacagcauguacugcacaugugguguccc
((((((((((((.(((.(((...(((((((.(((.(((.((((((((((.((((((((..........)))))))).))))))))))..))).))).))))).)))))..)))...))))))))))))

Structure

            --c   -c   cca  -     g   c   -a          c        ugga 
gggaugccacau   cag  cau   gc gugca ugc cuu  caagaaggug cauucaug    c
||||||||||||   |||  |||   || ||||| ||| |||  |||||||||| ||||||||     
cccuguggugua   guc  gua   cg caugu aug GAA  GUUCUUCCGC GUAAGUac    u
            cac   au   ---  a     a   A   GA          U        uaaa

Annotation confidence Not enough data

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Genome context

chrX: 134330538-134330665 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-513f-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-513f-3p

Accession	MIMAT0039670
Description	Callithrix jacchus cja-miR-513f-3p mature miRNA
Sequence	71 - UGAAUGUCGCCUUCUUGAGAAGA - 93
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857