miRBase entry: hpo-mir-40b

Stem-loop hpo-mir-40b

Accession

MI0032744

Description

Heligmosomoides polygyrus hpo-mir-40b precursor miRNA

Sequence

gcuagccgcuCGUUGUAGGAUCGUCGUUGAAAcaugcguagcggauuUCACCGGGCAUUCCUAUGACGAAuggacgaaca
.....(((.(((((((((((...(((.(((((..(((...)))..))))).)))....))))))))))).))).......

Structure

--gcuag   c           -UCG   U     ca   g 
       ccg uCGUUGUAGGA    UCG UGAAA  ugc  
       ||| |||||||||||    ||| |||||  ||| u
       ggu AGCAGUAUCCU    GGC ACUuu  gcg  
acaagca   A           UACG   C     ag   a

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_26756: 2194-2273 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-40b-5p

Accession	MIMAT0040574
Description	Heligmosomoides polygyrus hpo-miR-40b-5p mature miRNA
Sequence	11 - CGUUGUAGGAUCGUCGUUGAAA - 32
Evidence	experimental Illumina [1]

Mature hpo-miR-40b-3p

Accession	MIMAT0040575
Description	Heligmosomoides polygyrus hpo-miR-40b-3p mature miRNA
Sequence	48 - UCACCGGGCAUUCCUAUGACGAA - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488