miRBase entry: hpo-mir-40h

Stem-loop hpo-mir-40h

Accession

MI0032840

Description

Heligmosomoides polygyrus hpo-mir-40h precursor miRNA

Sequence

CCCGCAGAAUCACUCUGGUGACGcugucugagacaUCACCGGGAAUUCUGUGGUGA
.(((((((((...((((((((...((((...)))))))))))).)))))))))...

Structure

--C         CAC        CGc    u 
   CCGCAGAAU   UCUGGUGA   uguc  
   |||||||||   ||||||||   |||| g
   GGUGUCUUA   GGGCCACU   acag  
AGU         --A        ---    a

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_26756: 2494-2549 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40h

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-40h-5p

Accession	MIMAT0040763
Description	Heligmosomoides polygyrus hpo-miR-40h-5p mature miRNA
Sequence	1 - CCCGCAGAAUCACUCUGGUGACG - 23
Evidence	experimental Illumina [1]

Mature hpo-miR-40h-3p

Accession	MIMAT0040764
Description	Heligmosomoides polygyrus hpo-miR-40h-3p mature miRNA
Sequence	36 - UCACCGGGAAUUCUGUGGUGA - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488