miRBase entry: hpo-mir-5902

Stem-loop hpo-mir-5902

Accession

MI0032848

Description

Heligmosomoides polygyrus hpo-mir-5902 precursor miRNA

Sequence

caguaccuucUCUGGGAUGACACUACCCUUCAguaccucguugugAAGAGGAGUGUCCUCGCAGUGAaggucuucgc
.((.((((((.(((.((.((((((.(((((((..((...))..))))).)))))))).)).))).))))))))....

Structure

---c  u      U   G  U      A  -     gu  c 
    ag accuuc CUG GA GACACU CC CUUCA  ac  
    || |||||| ||| || |||||| || |||||  || u
    uc uggaAG GAC CU CUGUGA GG GAAgu  ug  
cgcu  -      U   G  C      -  A     gu  c

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_278211: 749-825 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5902

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-5902-5p

Accession	MIMAT0040779
Description	Heligmosomoides polygyrus hpo-miR-5902-5p mature miRNA
Sequence	11 - UCUGGGAUGACACUACCCUUCA - 32
Evidence	experimental Illumina [1]

Mature hpo-miR-5902-3p

Accession	MIMAT0040780
Description	Heligmosomoides polygyrus hpo-miR-5902-3p mature miRNA
Sequence	46 - AAGAGGAGUGUCCUCGCAGUGA - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488