miRBase entry: abu-mir-199-2

Stem-loop abu-mir-199-2


Accession
MI0033733
Description
Astatotilapia burtoni abu-mir-199-2 precursor miRNA


Sequence

CCCAGUGUUCAGACUACCUGUUcauugucauacugguguACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...

Structure
--C       U        C   U    guc 
   CCAGUGU CAGACUAC UGU cauu   a
   ||||||| |||||||| ||| ||||    
   GGUUACA GUCUGAUG ACA gugg   u
aUU       C        -   u    uca 


Annotation confidence Not enough data
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Genome context
JH425511.1: 199712-199772 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-199-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-199-5p

Accession MIMAT0042050
Description Astatotilapia burtoni abu-miR-199-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUU - 22
Evidence experimental
Illumina [1]

Mature abu-miR-199-3p

Accession MIMAT0042051
Description Astatotilapia burtoni abu-miR-199-3p mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381