miRBase entry: abu-mir-135a

Stem-loop abu-mir-135a

Accession

MI0033771

Description

Astatotilapia burtoni abu-mir-135a precursor miRNA

Sequence

UAUGGCUUUUUAUUCCUAUCUGAcuguacuuaugguucaUAUAGGGAUGGAAGCCAUGCa
((((((((((.((((((((.(((((((....)))).))).))))))))))))))))))..

Structure

--          U        C   -    a 
  UAUGGCUUUU AUUCCUAU UGA cugu c
  |||||||||| |||||||| ||| ||||  
  GUACCGAAGG UAGGGAUA acu ggua u
aC          -        U   u    u

Annotation confidence Not enough data

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Genome context

JH425555.1: 917020-917079 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-135a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-135a-5p

Accession	MIMAT0042077
Description	Astatotilapia burtoni abu-miR-135a-5p mature miRNA
Sequence	1 - UAUGGCUUUUUAUUCCUAUCUGA - 23
Evidence	experimental Illumina [1]

Mature abu-miR-135a-3p

Accession	MIMAT0042078
Description	Astatotilapia burtoni abu-miR-135a-3p mature miRNA
Sequence	40 - UAUAGGGAUGGAAGCCAUGC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381