miRBase entry: abu-mir-125a-2

Stem-loop abu-mir-125a-2

Accession

MI0033794

Description

Astatotilapia burtoni abu-mir-125a-2 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaggucaaagcaggucacaggugagguccucgggaac
..((((((..(((((.(((((((............))))))))))))..))))))...

Structure

-UC      AC     A       gguca 
   CCUGAG  CCUUA CCUGUGa     a
   ||||||  ||||| |||||||      
   gggcuc  ggagu ggacacu     a
caa      cu     -       ggacg

Annotation confidence Not enough data

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Genome context

JH425385.1: 86281-86338 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-125a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-125a

Accession	MIMAT0042095
Description	Astatotilapia burtoni abu-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381