miRBase entry: abu-mir-194a

Stem-loop abu-mir-194a


Accession
MI0033810
Description
Astatotilapia burtoni abu-mir-194a precursor miRNA


Sequence

UGUAACAGCAACUCCAUGUGGAagcugugucaguuccaguggaggugcuguuacuug
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure
--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   cauugucgu gaggug accuu gac  
guu         g      -     -   u 


Annotation confidence Not enough data
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Genome context
JH425458.1: 831251-831307 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-194a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-194a

Accession MIMAT0042107
Description Astatotilapia burtoni abu-miR-194a mature miRNA
Sequence 1 - UGUAACAGCAACUCCAUGUGGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381