miRBase entry: abu-mir-24b

Stem-loop abu-mir-24b

Accession

MI0033919

Description

Astatotilapia burtoni abu-mir-24b precursor miRNA

Sequence

UGCCUACUGAACUGGUAUCAGUguuauaccugaaaacUGGCUCAGUUCAGCAGGAACAGg
..(((.(((((((((..(((((.............))))).))))))))).)))......

Structure

----UG   A         UA     guuau 
      CCU CUGAACUGG  UCAGU     a
      ||| |||||||||  |||||     c
      GGA GACUUGACU  GGUca     c
gGACAA   C         -C     aaagu

Annotation confidence Not enough data

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Genome context

JH425446.1: 540111-540170 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-24b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-24b-5p

Accession	MIMAT0042181
Description	Astatotilapia burtoni abu-miR-24b-5p mature miRNA
Sequence	1 - UGCCUACUGAACUGGUAUCAGU - 22
Evidence	experimental Illumina [1]

Mature abu-miR-24b-3p

Accession	MIMAT0042182
Description	Astatotilapia burtoni abu-miR-24b-3p mature miRNA
Sequence	38 - UGGCUCAGUUCAGCAGGAACAG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381