miRBase entry: abu-mir-728a

Stem-loop abu-mir-728a

Accession

MI0033943

Description

Astatotilapia burtoni abu-mir-728a precursor miRNA

Sequence

aaauguaguagacuauaaguauacaugaaacucagaaaguAUACUAAGUAUACUACGUUUAC
((((((((((.(((...(((((((..............))))))).))).))))))))))..

Structure

--          g   aua       augaaa 
  aaauguagua acu   aguauac      c
  |||||||||| |||   |||||||       
  UUUGCAUCAU UGA   UCAUAug      u
CA          A   --A       aaagac

Annotation confidence Not enough data

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Genome context

JH425974.1: 235092-235153 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-728a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-728a

Accession	MIMAT0042206
Description	Astatotilapia burtoni abu-miR-728a mature miRNA
Sequence	41 - AUACUAAGUAUACUACGUUUAC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381