miRBase entry: abu-mir-24c

Stem-loop abu-mir-24c

Accession

MI0033992

Description

Astatotilapia burtoni abu-mir-24c precursor miRNA

Sequence

ugccuacugaacuggauucagugugucuuugcagaacUGGCUCAGUCCAGCAGGAACAA
..(((.(((.(((((..(((((.(((....)))..))))).))))).))).))).....

Structure

---ug   a   a     au     -g   c 
     ccu cug acugg  ucagu  ugu u
     ||| ||| |||||  |||||  |||  
     GGA GAC UGACU  GGUca  acg u
AACAA   C   C     -C     ag   u

Annotation confidence Not enough data

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Genome context

JH425529.1: 400872-400930 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-24c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-24c

Accession	MIMAT0042258
Description	Astatotilapia burtoni abu-miR-24c mature miRNA
Sequence	38 - UGGCUCAGUCCAGCAGGAACAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381