miRBase entry: abu-mir-10561

Stem-loop abu-mir-10561

Accession

MI0034004

Description

Astatotilapia burtoni abu-mir-10561 precursor miRNA

Sequence

CUUCGUGUGUUUUUGGUGGUUUuuguacauuugaaggaaaacaugccgaagcacacgaacca
.((((((((((((.(((.((((((.(........).))))))..)))))))))))))))...

Structure

--C            U   -G      g aca 
   UUCGUGUGUUUU GGU  GUUUuu u   u
   |||||||||||| |||  |||||| |    
   aagcacacgaag ccg  caaaag a   u
acc            -   ua      g agu

Annotation confidence Not enough data

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Genome context

JH425444.1: 98581-98642 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-10561

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-10561

Accession	MIMAT0042269
Description	Astatotilapia burtoni abu-miR-10561 mature miRNA
Sequence	1 - CUUCGUGUGUUUUUGGUGGUUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381