miRBase entry: mze-mir-92a-1

Stem-loop mze-mir-92a-1

Accession

MI0034020

Description

Metriaclima zebra mze-mir-92a-1 precursor miRNA

Sequence

agguugggagagguggcaaugcucugugcuuguguggUAUUGCACUUGUCCCGGCCUGU
(((((((((.(((((.(((((((....((....)))))))))))))).)))))))))..

Structure

--         g     g       cugu  u 
  agguuggga aggug caaugcu    gc u
  ||||||||| ||||| |||||||    ||  
  UCCGGCCCU UUCAC GUUAUgg    ug g
UG         G     -       ----  u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AGTA03000134.1: 1276024-1276082 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mze-mir-92a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-92a

Accession	MIMAT0042283
Description	Metriaclima zebra mze-miR-92a mature miRNA
Sequence	38 - UAUUGCACUUGUCCCGGCCUGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381