miRBase entry: mze-mir-338-1

Stem-loop mze-mir-338-1


Accession
MI0034134
Description
Metriaclima zebra mze-mir-338-1 precursor miRNA


Sequence

aacaacauccuggugcugccugaguaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure
-     c   -         ccu    aguu 
 aacaa auc cuggugcug   gagu    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000130.1: 1388199-1388258 [-]

Database links

Mature mze-miR-338

Accession MIMAT0042360
Description Metriaclima zebra mze-miR-338 mature miRNA
Sequence 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381