miRBase entry: nbr-mir-96-1

Stem-loop nbr-mir-96-1

Accession

MI0034371

Description

Neolamprologus brichardi nbr-mir-96-1 precursor miRNA

Sequence

UUUGGCACUAGCACAUUUUUGCUucuguauauauacuuugagcaauuauguguagugccaauau
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure

--U         G     UU      -cu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   aaccgugau gugua  aacgag   cau u
uau         -     uu      uuu   a

Annotation confidence Not enough data

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Genome context

JH422274.1: 7271466-7271529 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-96-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-96

Accession	MIMAT0042528
Description	Neolamprologus brichardi nbr-miR-96 mature miRNA
Sequence	1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381