miRBase entry: nbr-mir-212b

Stem-loop nbr-mir-212b

Accession

MI0034499

Description

Neolamprologus brichardi nbr-mir-212b precursor miRNA

Sequence

ACCUUGGCUCUAGACUGCUUACUgcuaaaacuccuccaaaguacaguaacagucuacagucauggcu
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-A  U     C       C      cuaaaacu 
  CC UGGCU UAGACUG UUACUg        c
  || ||||| ||||||| ||||||        c
  gg acuga aucugac aaugac        u
uc  u     c       -      augaaacc

Annotation confidence Not enough data

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Genome context

JH422353.1: 1336977-1337043 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-212b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-212b

Accession	MIMAT0042620
Description	Neolamprologus brichardi nbr-miR-212b mature miRNA
Sequence	1 - ACCUUGGCUCUAGACUGCUUACU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381